A guide to modeling reaction-diffusion of molecules with the E-Cell System

• A guide to modeling reaction-diffusion of molecules with Spatiocyte
  • Abstract
  • Introduction
• Spatiocyte Method
• Installing and Running Spatiocyte
  • Ubuntu Linux
  • Mac OS X
  • Testing the installation and running a model
• Spatiocyte Modules
  • Compartment
  • SpatiocyteStepper
  • MoleculePopulateProcess
  • DiffusionProcess
  • PeriodicBoundaryDiffusionProcess
  • DiffusionInfluencedReactionProcess
  • SpatiocyteNextReactionProcess
  • VisualizationLogProcess
  • MicroscopyTrackingProcess
  • IteratingLogProcess
  • SpatiocyteVisualizer
• Parameter Tuning Example
• Concluding Remarks
• Acknowledgments
• References

index

• Index
• Module Index
• Search Page